3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8HTZ_070 not in the Motif Atlas
Homologous match to IL_5J7L_250
Geometric discrepancy: 0.0556
The information below is about IL_5J7L_250
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

8HTZ|1|a|G|188
8HTZ|1|a|G|189
8HTZ|1|a|A|190
8HTZ|1|a|A|191
8HTZ|1|a|C|192
8HTZ|1|a|U|193
8HTZ|1|a|G|194
*
8HTZ|1|a|C|201
8HTZ|1|a|U|202
8HTZ|1|a|A|203
8HTZ|1|a|A|204
8HTZ|1|a|G|205
8HTZ|1|a|U|206
8HTZ|1|a|A|207
8HTZ|1|a|C|208

Current chains

Chain a
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L35
Chain k
50S ribosomal protein L15
Chain w
50S ribosomal protein L28

Coloring options:


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