3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GCAAG*CAACC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8HTZ_096 not in the Motif Atlas
Homologous match to IL_5J7L_274
Geometric discrepancy: 0.1845
The information below is about IL_5J7L_274
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

8HTZ|1|a|G|875
8HTZ|1|a|C|876
8HTZ|1|a|A|877
8HTZ|1|a|A|878
8HTZ|1|a|G|879
*
8HTZ|1|a|C|898
8HTZ|1|a|A|899
8HTZ|1|a|A|900
8HTZ|1|a|C|901
8HTZ|1|a|C|902

Current chains

Chain a
23S rRNA

Nearby chains

Chain X
Transfer RNA; tRNA
Chain l
50S ribosomal protein L16

Coloring options:


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