3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
8HTZ|1|a|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8HTZ_129 not in the Motif Atlas
Homologous match to IL_5J7L_308
Geometric discrepancy: 0.0576
The information below is about IL_5J7L_308
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_47346.2
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

8HTZ|1|a|C|1686
8HTZ|1|a|G|1687
8HTZ|1|a|U|1688
8HTZ|1|a|A|1689
8HTZ|1|a|A|1690
8HTZ|1|a|C|1691
*
8HTZ|1|a|G|1696
8HTZ|1|a|G|1697
8HTZ|1|a|A|1698
8HTZ|1|a|G|1699
8HTZ|1|a|A|1700
8HTZ|1|a|A|1701
8HTZ|1|a|G|1702

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain c
50S ribosomal protein L2

Coloring options:


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