IL_8HTZ_151

3D structure

PDB id

8HTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

8HTZ|1|a|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HTZ_151 not in the Motif Atlas

Geometric match to IL_5LYS_008

Geometric discrepancy: 0.3854

The information below is about IL_5LYS_008

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8HTZ|1|a|U|2401
8HTZ|1|a|U|2402
8HTZ|1|a|C|2403
*
8HTZ|1|a|G|2414
8HTZ|1|a|G|2415

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L33

Chain 2

50S ribosomal protein L35

Chain k

50S ribosomal protein L15