IL_8HTZ_184

3D structure

PDB id

8HTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8HTZ|1|a|U|846, 8HTZ|1|a|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HTZ_184 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.2569

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

8HTZ|1|a|A|844
8HTZ|1|a|A|845
8HTZ|1|a|U|846
8HTZ|1|a|U|847
8HTZ|1|a|C|848
*
8HTZ|1|a|G|930
8HTZ|1|a|U|931
8HTZ|1|a|U|932
8HTZ|1|a|A|933
8HTZ|1|a|U|934

Current chains

Chain a

23S rRNA

Nearby chains

Chain y

50S ribosomal protein L30