3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
AAUUC*GUUAU
Length
10 nucleotides
Bulged bases
8HTZ|1|a|U|846, 8HTZ|1|a|U|931
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8HTZ_184 not in the Motif Atlas
Homologous match to IL_5J7L_399
Geometric discrepancy: 0.2569
The information below is about IL_5J7L_399
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_96236.1
Basepair signature
cWW-tWW-cWW-L-cWW
Number of instances in this motif group
1

Unit IDs

8HTZ|1|a|A|844
8HTZ|1|a|A|845
8HTZ|1|a|U|846
8HTZ|1|a|U|847
8HTZ|1|a|C|848
*
8HTZ|1|a|G|930
8HTZ|1|a|U|931
8HTZ|1|a|U|932
8HTZ|1|a|A|933
8HTZ|1|a|U|934

Current chains

Chain a
23S rRNA

Nearby chains

Chain y
50S ribosomal protein L30

Coloring options:


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