3D structure

PDB id
8HU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.69 Å

Loop

Sequence
CGCAG*UCAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8HU1_026 not in the Motif Atlas
Homologous match to IL_5J7L_027
Geometric discrepancy: 0.0805
The information below is about IL_5J7L_027
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

8HU1|1|A|C|580
8HU1|1|A|G|581
8HU1|1|A|C|582
8HU1|1|A|A|583
8HU1|1|A|G|584
*
8HU1|1|A|U|757
8HU1|1|A|C|758
8HU1|1|A|A|759
8HU1|1|A|G|760
8HU1|1|A|G|761

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17

Coloring options:


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