3D structure

PDB id
8HU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.69 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8HU1_070 not in the Motif Atlas
Geometric match to IL_5J7L_250
Geometric discrepancy: 0.0623
The information below is about IL_5J7L_250
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

8HU1|1|a|G|188
8HU1|1|a|G|189
8HU1|1|a|A|190
8HU1|1|a|A|191
8HU1|1|a|C|192
8HU1|1|a|U|193
8HU1|1|a|G|194
*
8HU1|1|a|C|201
8HU1|1|a|U|202
8HU1|1|a|A|203
8HU1|1|a|A|204
8HU1|1|a|G|205
8HU1|1|a|U|206
8HU1|1|a|A|207
8HU1|1|a|C|208

Current chains

Chain a
23S rRNA

Nearby chains

Chain k
50S ribosomal protein L15
Chain w
50S ribosomal protein L28

Coloring options:


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