IL_8HU1_123

3D structure

PDB id

8HU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HU1_123 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.0537

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8HU1|1|a|G|1651
8HU1|1|a|A|1652
8HU1|1|a|G|1653
8HU1|1|a|A|1654
8HU1|1|a|A|1655
8HU1|1|a|C|1656
*
8HU1|1|a|G|2004
8HU1|1|a|A|2005
8HU1|1|a|C|2006

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain m

50S ribosomal protein L17