IL_8I9R_046

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCACAAAA*UGGGCGCUCAAG

Length

21 nucleotides

Bulged bases

8I9R|1|C1|A|1186, 8I9R|1|C1|C|1298

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9R|1|C1|C|1169
8I9R|1|C1|U|1170
8I9R|1|C1|C|1171
8I9R|1|C1|A|1172
8I9R|1|C1|C|1183
8I9R|1|C1|A|1184
8I9R|1|C1|A|1185
8I9R|1|C1|A|1186
8I9R|1|C1|A|1187
*
8I9R|1|C1|U|1281
8I9R|1|C1|G|1282
8I9R|1|C1|G|1292
8I9R|1|C1|G|1293
8I9R|1|C1|C|1294
8I9R|1|C1|G|1295
8I9R|1|C1|C|1296
8I9R|1|C1|U|1297
8I9R|1|C1|C|1298
8I9R|1|C1|A|1299
8I9R|1|C1|A|1300
8I9R|1|C1|G|1301

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LM

60S ribosomal protein L14-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain LS

60S ribosomal protein L20

Chain Lf

60S ribosomal protein l33-like protein