IL_8I9R_047

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGU*GCC

Length

7 nucleotides

Bulged bases

8I9R|1|C1|C|1190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9R_047 not in the Motif Atlas

Geometric match to IL_5TBW_112

Geometric discrepancy: 0.3332

The information below is about IL_5TBW_112

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8I9R|1|C1|G|1189
8I9R|1|C1|C|1190
8I9R|1|C1|G|1191
8I9R|1|C1|U|1192
*
8I9R|1|C1|G|1277
8I9R|1|C1|C|1278
8I9R|1|C1|C|1279

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LS

60S ribosomal protein L20