IL_8I9R_049
3D structure
- PDB id
- 8I9R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CG
- Length
- 5 nucleotides
- Bulged bases
- 8I9R|1|C1|A|1368
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9R_049 not in the Motif Atlas
- Homologous match to IL_8C3A_062
- Geometric discrepancy: 0.3771
- The information below is about IL_8C3A_062
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
8I9R|1|C1|C|1367
8I9R|1|C1|A|1368
8I9R|1|C1|G|1369
*
8I9R|1|C1|C|1402
8I9R|1|C1|G|1403
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Ce
- Protein MAK16
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
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