IL_8I9R_055

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAA*UA

Length

5 nucleotides

Bulged bases

8I9R|1|C1|A|1874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9R_055 not in the Motif Atlas

Geometric match to IL_5TBW_113

Geometric discrepancy: 0.2888

The information below is about IL_5TBW_113

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8I9R|1|C1|U|1873
8I9R|1|C1|A|1874
8I9R|1|C1|A|1875
*
8I9R|1|C1|U|2302
8I9R|1|C1|A|2303

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cf

60S ribosome biogenesis protein Rrp14

Chain Cg

Brix domain-containing protein