IL_8I9R_059

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9R_059 not in the Motif Atlas

Geometric match to IL_5TBW_034

Geometric discrepancy: 0.1374

The information below is about IL_5TBW_034

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8I9R|1|C1|U|2372
8I9R|1|C1|U|2373
8I9R|1|C1|G|2374
*
8I9R|1|C1|C|2767
8I9R|1|C1|C|2768
8I9R|1|C1|A|2769

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CG

60S ribosome subunit biogenesis protein NIP7