IL_8I9R_066

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

8I9R|1|C1|A|2679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9R_066 not in the Motif Atlas

Geometric match to IL_4V9F_098

Geometric discrepancy: 0.3333

The information below is about IL_4V9F_098

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8I9R|1|C1|G|2678
8I9R|1|C1|A|2679
8I9R|1|C1|U|2680
*
8I9R|1|C1|A|2694
8I9R|1|C1|C|2695

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cx

Ribosome biogenesis regulatory protein

Chain Cy

Ribosome production factor 2 homolog

Chain LT

60S ribosomal protein l21-like protein