IL_8I9R_071
3D structure
- PDB id
- 8I9R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCA*UGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9R_071 not in the Motif Atlas
- Geometric match to IL_4TS2_003
- Geometric discrepancy: 0.2248
- The information below is about IL_4TS2_003
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_52767.5
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 28
Unit IDs
8I9R|1|C1|U|2971
8I9R|1|C1|C|2972
8I9R|1|C1|A|2973
*
8I9R|1|C1|U|2995
8I9R|1|C1|G|2996
8I9R|1|C1|A|2997
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain CN
- Eukaryotic translation initiation factor 6
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LV
- 60S ribosomal protein l23-like protein
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