IL_8I9R_102

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAU*AUUU

Length

7 nucleotides

Bulged bases

8I9R|1|C1|U|757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9R_102 not in the Motif Atlas

Geometric match to IL_5J7L_050

Geometric discrepancy: 0.2943

The information below is about IL_5J7L_050

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8I9R|1|C1|G|735
8I9R|1|C1|A|736
8I9R|1|C1|U|737
*
8I9R|1|C1|A|756
8I9R|1|C1|U|757
8I9R|1|C1|U|758
8I9R|1|C1|U|759

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CU

rRNA-processing protein EBP2