IL_8I9T_011

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*UGUGUA

Length

8 nucleotides

Bulged bases

8I9T|1|C1|U|244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9T|1|C1|U|163
8I9T|1|C1|G|164
*
8I9T|1|C1|U|240
8I9T|1|C1|G|241
8I9T|1|C1|U|242
8I9T|1|C1|G|243
8I9T|1|C1|U|244
8I9T|1|C1|A|245

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CC

Ribosome biogenesis protein ERB1

Chain CR

Nucleolar protein 16

Chain LG

60S ribosomal protein L8

Chain LL

60S ribosomal protein L13

Chain Lh

dolichyl-diphosphooligosaccharide--protein glycotransferase