IL_8I9T_016

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

8I9T|1|C1|A|330

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9T_016 not in the Motif Atlas

Homologous match to IL_5TBW_013

Geometric discrepancy: 0.1292

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8I9T|1|C1|G|329
8I9T|1|C1|A|330
8I9T|1|C1|C|331
*
8I9T|1|C2|G|25
8I9T|1|C2|U|26

Current chains

Chain C1

RNA (3341-MER)

Chain C2

RNA (256-MER)

Nearby chains

Chain CR

Nucleolar protein 16

Chain LC

60S ribosomal protein L4-like protein

Chain LY

60S ribosomal protein L26-like protein