IL_8I9T_058

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9T|1|C1|A|1862
8I9T|1|C1|A|1863
8I9T|1|C1|C|1864
8I9T|1|C1|A|1865
8I9T|1|C1|A|1866
8I9T|1|C1|U|1867
8I9T|1|C1|G|1868
*
8I9T|1|C1|C|2308
8I9T|1|C1|U|2309
8I9T|1|C1|A|2310
8I9T|1|C1|U|2311

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cf

60S ribosome biogenesis protein Rrp14

Chain Cg

Brix domain-containing protein