IL_8I9T_070

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9T_070 not in the Motif Atlas

Homologous match to IL_8C3A_110

Geometric discrepancy: 0.3168

The information below is about IL_8C3A_110

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8I9T|1|C1|G|2728
8I9T|1|C1|U|2729
8I9T|1|C1|C|2730
8I9T|1|C1|C|2731
*
8I9T|1|C1|G|2745
8I9T|1|C1|C|2746

Current chains

Chain C1

RNA (3341-MER)

Nearby chains