IL_8I9T_091

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AA*UCCU

Length

6 nucleotides

Bulged bases

8I9T|1|C1|C|3322, 8I9T|1|C1|C|3323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9T_091 not in the Motif Atlas

Homologous match to IL_8C3A_137

Geometric discrepancy: 0.525

The information below is about IL_8C3A_137

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8I9T|1|C1|A|3264
8I9T|1|C1|A|3265
*
8I9T|1|C1|U|3321
8I9T|1|C1|C|3322
8I9T|1|C1|C|3323
8I9T|1|C1|U|3324

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cg

Brix domain-containing protein

Chain LB

60S ribosomal protein L3-like protein