IL_8I9T_095

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9T_095 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.1823

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8I9T|1|C1|A|3282
8I9T|1|C1|G|3283
8I9T|1|C1|A|3284
8I9T|1|C1|G|3285
*
8I9T|1|C1|C|3300
8I9T|1|C1|G|3301
8I9T|1|C1|A|3302
8I9T|1|C1|U|3303

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cb

ATP-dependent RNA helicase DBP10