IL_8I9T_099
3D structure
- PDB id
- 8I9T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGAAU*GAAUUCCGUGAA
- Length
- 17 nucleotides
- Bulged bases
- 8I9T|1|C2|A|80, 8I9T|1|C2|C|84, 8I9T|1|C2|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8I9T|1|C2|U|69
8I9T|1|C2|G|70
8I9T|1|C2|A|71
8I9T|1|C2|A|72
8I9T|1|C2|U|73
*
8I9T|1|C2|G|78
8I9T|1|C2|A|79
8I9T|1|C2|A|80
8I9T|1|C2|U|81
8I9T|1|C2|U|82
8I9T|1|C2|C|83
8I9T|1|C2|C|84
8I9T|1|C2|G|85
8I9T|1|C2|U|86
8I9T|1|C2|G|87
8I9T|1|C2|A|88
8I9T|1|C2|A|89
Current chains
- Chain C2
- RNA (256-MER)
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Lj
- Ribosomal protein L37
Coloring options: