IL_8I9T_106

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCUUGACAGC*GCCGAA

Length

16 nucleotides

Bulged bases

8I9T|1|C1|U|1203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9T|1|C1|U|1200
8I9T|1|C1|C|1201
8I9T|1|C1|U|1202
8I9T|1|C1|U|1203
8I9T|1|C1|G|1204
8I9T|1|C1|A|1205
8I9T|1|C1|C|1206
8I9T|1|C1|A|1207
8I9T|1|C1|G|1208
8I9T|1|C1|C|1209
*
8I9T|1|C1|G|1264
8I9T|1|C1|C|1265
8I9T|1|C1|C|1266
8I9T|1|C1|G|1267
8I9T|1|C1|A|1268
8I9T|1|C1|A|1269

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CF

Ribosome assembly factor mrt4

Chain Cz

rRNA-processing protein

Chain LS

60S ribosomal protein L20