IL_8I9V_010
3D structure
- PDB id
- 8I9V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUG*CU
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9V_010 not in the Motif Atlas
- Homologous match to IL_5TBW_009
- Geometric discrepancy: 0.3148
- The information below is about IL_5TBW_009
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_05035.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 38
Unit IDs
8I9V|1|C1|A|157
8I9V|1|C1|U|158
8I9V|1|C1|G|159
*
8I9V|1|C1|C|249
8I9V|1|C1|U|250
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CC
- Ribosome biogenesis protein ERB1
- Chain CE
- RNA helicase
- Chain CR
- Nucleolar protein 16
- Chain LL
- 60S ribosomal protein L13
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
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