IL_8I9V_032

3D structure

PDB id

8I9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

8I9V|1|C1|A|914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9V|1|C1|G|786
8I9V|1|C1|A|787
8I9V|1|C1|A|788
8I9V|1|C1|A|789
8I9V|1|C1|G|790
*
8I9V|1|C1|C|912
8I9V|1|C1|U|913
8I9V|1|C1|A|914
8I9V|1|C1|G|915
8I9V|1|C1|U|916
8I9V|1|C1|A|917
8I9V|1|C1|G|918
8I9V|1|C1|C|919

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cf

60S ribosome biogenesis protein Rrp14

Chain LC

60S ribosomal protein L4-like protein

Chain LL

60S ribosomal protein L13

Chain Lj

Ribosomal protein L37