IL_8I9V_051

3D structure

PDB id

8I9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACUG*CUC

Length

8 nucleotides

Bulged bases

8I9V|1|C1|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9V_051 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.2181

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8I9V|1|C1|G|1244
8I9V|1|C1|A|1245
8I9V|1|C1|C|1246
8I9V|1|C1|U|1247
8I9V|1|C1|G|1248
*
8I9V|1|C1|C|1257
8I9V|1|C1|U|1258
8I9V|1|C1|C|1259

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CF

Ribosome assembly factor mrt4

Chain CK

Ribosome biogenesis protein NSA2 homolog

Chain LK

60S ribosomal protein L12-like protein