IL_8I9V_082

3D structure

PDB id

8I9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

8I9V|1|C1|G|3035, 8I9V|1|C1|U|3036

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9V_082 not in the Motif Atlas

Homologous match to IL_8C3A_128

Geometric discrepancy: 0.2332

The information below is about IL_8C3A_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8I9V|1|C1|U|3020
8I9V|1|C1|U|3021
*
8I9V|1|C1|A|3034
8I9V|1|C1|G|3035
8I9V|1|C1|U|3036
8I9V|1|C1|G|3037

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cb

ATP-dependent RNA helicase DBP10

Chain Cf

60S ribosome biogenesis protein Rrp14

Chain Ld

Putative 60S ribosomal protein