IL_8I9V_101

3D structure

PDB id

8I9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

8I9V|1|C3|A|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9V_101 not in the Motif Atlas

Geometric match to IL_1CSL_002

Geometric discrepancy: 0.3139

The information below is about IL_1CSL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8I9V|1|C3|G|30
8I9V|1|C3|A|31
8I9V|1|C3|C|32
*
8I9V|1|C3|G|49
8I9V|1|C3|C|50

Current chains

Chain C3

RNA (161-MER)

Nearby chains

Chain CB

Ribosome biogenesis protein C8F11.04

Chain CE

RNA helicase