IL_8I9V_108

3D structure

PDB id

8I9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCC*GUUGU

Length

8 nucleotides

Bulged bases

8I9V|1|C1|U|3294, 8I9V|1|C1|U|3295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9V_108 not in the Motif Atlas

Geometric match to IL_4PDQ_004

Geometric discrepancy: 0.2178

The information below is about IL_4PDQ_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8I9V|1|C1|G|3288
8I9V|1|C1|C|3289
8I9V|1|C1|C|3290
*
8I9V|1|C1|G|3293
8I9V|1|C1|U|3294
8I9V|1|C1|U|3295
8I9V|1|C1|G|3296
8I9V|1|C1|U|3297

Current chains

Chain C1

RNA (3341-MER)

Nearby chains