IL_8I9W_016

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAC*GGGUUAAAUAGCAC

Length

18 nucleotides

Bulged bases

8I9W|1|C1|U|390, 8I9W|1|C1|A|394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9W_016 not in the Motif Atlas

Homologous match to IL_8C3A_015

Geometric discrepancy: 0.0992

The information below is about IL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8I9W|1|C1|G|368
8I9W|1|C1|C|369
8I9W|1|C1|A|370
8I9W|1|C1|C|371
*
8I9W|1|C1|G|382
8I9W|1|C1|G|383
8I9W|1|C1|G|384
8I9W|1|C1|U|385
8I9W|1|C1|U|386
8I9W|1|C1|A|387
8I9W|1|C1|A|388
8I9W|1|C1|A|389
8I9W|1|C1|U|390
8I9W|1|C1|A|391
8I9W|1|C1|G|392
8I9W|1|C1|C|393
8I9W|1|C1|A|394
8I9W|1|C1|C|395

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain LP

60S ribosomal protein l17-like protein

Chain LY

60S ribosomal protein L26-like protein