IL_8I9W_022

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAUGUGG*UGUUAUAGC

Length

17 nucleotides

Bulged bases

8I9W|1|C1|U|525, 8I9W|1|C1|U|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9W|1|C1|G|522
8I9W|1|C1|A|523
8I9W|1|C1|A|524
8I9W|1|C1|U|525
8I9W|1|C1|G|526
8I9W|1|C1|U|527
8I9W|1|C1|G|528
8I9W|1|C1|G|529
*
8I9W|1|C1|U|542
8I9W|1|C1|G|543
8I9W|1|C1|U|544
8I9W|1|C1|U|545
8I9W|1|C1|A|546
8I9W|1|C1|U|547
8I9W|1|C1|A|548
8I9W|1|C1|G|549
8I9W|1|C1|C|550

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cz

rRNA-processing protein

Chain LM

60S ribosomal protein L14-like protein

Chain LS

60S ribosomal protein L20