IL_8I9W_033

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9W_033 not in the Motif Atlas

Homologous match to IL_5TBW_034

Geometric discrepancy: 0.1609

The information below is about IL_5TBW_034

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8I9W|1|C1|U|935
8I9W|1|C1|U|936
8I9W|1|C1|U|937
*
8I9W|1|C1|A|946
8I9W|1|C1|U|947
8I9W|1|C1|A|948

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CU

rRNA-processing protein EBP2

Chain LT

60S ribosomal protein l21-like protein