IL_8I9W_037

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9W_037 not in the Motif Atlas

Geometric match to IL_4LFB_006

Geometric discrepancy: 0.3639

The information below is about IL_4LFB_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8I9W|1|C1|G|972
8I9W|1|C1|A|973
8I9W|1|C1|G|974
*
8I9W|1|C1|U|1038
8I9W|1|C1|A|1039
8I9W|1|C1|U|1040

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LF

60S ribosomal protein l7-like protein

Chain LT

60S ribosomal protein l21-like protein