IL_8I9W_050
3D structure
- PDB id
- 8I9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGGC*GAAUC
- Length
- 10 nucleotides
- Bulged bases
- 8I9W|1|C1|G|1218
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9W_050 not in the Motif Atlas
- Homologous match to IL_8C3A_058
- Geometric discrepancy: 0.3954
- The information below is about IL_8C3A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30542.5
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8I9W|1|C1|G|1216
8I9W|1|C1|U|1217
8I9W|1|C1|G|1218
8I9W|1|C1|G|1219
8I9W|1|C1|C|1220
*
8I9W|1|C1|G|1232
8I9W|1|C1|A|1233
8I9W|1|C1|A|1234
8I9W|1|C1|U|1235
8I9W|1|C1|C|1236
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CF
- Ribosome assembly factor mrt4
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain Cb
- ATP-dependent RNA helicase DBP10
- Chain LK
- 60S ribosomal protein L12-like protein
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