IL_8I9W_058

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9W|1|C1|A|1862
8I9W|1|C1|A|1863
8I9W|1|C1|C|1864
8I9W|1|C1|A|1865
8I9W|1|C1|A|1866
8I9W|1|C1|U|1867
8I9W|1|C1|G|1868
*
8I9W|1|C1|C|2308
8I9W|1|C1|U|2309
8I9W|1|C1|A|2310
8I9W|1|C1|U|2311

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LP

60S ribosomal protein l17-like protein

Chain Ld

Putative 60S ribosomal protein