IL_8I9W_060

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AA*UGU

Length

5 nucleotides

Bulged bases

8I9W|1|C1|G|2297

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9W_060 not in the Motif Atlas

Geometric match to IL_4C7O_004

Geometric discrepancy: 0.3649

The information below is about IL_4C7O_004

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

8I9W|1|C1|A|1879
8I9W|1|C1|A|1880
*
8I9W|1|C1|U|2296
8I9W|1|C1|G|2297
8I9W|1|C1|U|2298

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cb

ATP-dependent RNA helicase DBP10

Chain LV

60S ribosomal protein l23-like protein