IL_8I9W_068

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUGUAGAAUAGG*CUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9W|1|C1|G|2413
8I9W|1|C1|G|2414
8I9W|1|C1|U|2415
8I9W|1|C1|G|2416
8I9W|1|C1|U|2417
8I9W|1|C1|A|2418
8I9W|1|C1|G|2419
8I9W|1|C1|A|2420
8I9W|1|C1|A|2421
8I9W|1|C1|U|2422
8I9W|1|C1|A|2423
8I9W|1|C1|G|2424
8I9W|1|C1|G|2425
*
8I9W|1|C1|C|2454
8I9W|1|C1|U|2455
8I9W|1|C1|A|2456
8I9W|1|C1|C|2457

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CP

RNA methyltransferase nop2-like protein

Chain Lq

Ribosomal protein