IL_8I9W_072
3D structure
- PDB id
- 8I9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CU*AACGUG
- Length
- 8 nucleotides
- Bulged bases
- 8I9W|1|C1|A|2899, 8I9W|1|C1|C|2900, 8I9W|1|C1|G|2901, 8I9W|1|C1|U|2902
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9W_072 not in the Motif Atlas
- Homologous match to IL_5TBW_109
- Geometric discrepancy: 0.4521
- The information below is about IL_5TBW_109
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_24807.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
8I9W|1|C1|C|2839
8I9W|1|C1|U|2840
*
8I9W|1|C1|A|2898
8I9W|1|C1|A|2899
8I9W|1|C1|C|2900
8I9W|1|C1|G|2901
8I9W|1|C1|U|2902
8I9W|1|C1|G|2903
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
- Chain LV
- 60S ribosomal protein l23-like protein
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