IL_8I9W_074
3D structure
- PDB id
- 8I9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UA*UAAG
- Length
- 6 nucleotides
- Bulged bases
- 8I9W|1|C1|A|2869
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9W_074 not in the Motif Atlas
- Geometric match to IL_4V9F_089
- Geometric discrepancy: 0.143
- The information below is about IL_4V9F_089
- Detailed Annotation
- Major groove platform with intercalation
- Broad Annotation
- Major groove platform
- Motif group
- IL_94991.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 17
Unit IDs
8I9W|1|C1|U|2849
8I9W|1|C1|A|2850
*
8I9W|1|C1|U|2867
8I9W|1|C1|A|2868
8I9W|1|C1|A|2869
8I9W|1|C1|G|2870
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain CL
- Putative GTP binding protein
- Chain CO
- DUF2423 domain-containing protein
- Chain LH
- 60S ribosomal protein l9-like protein
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