IL_8I9W_084

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8I9W|1|C1|U|3121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9W_084 not in the Motif Atlas

Geometric match to IL_2PJP_001

Geometric discrepancy: 0.1967

The information below is about IL_2PJP_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8I9W|1|C1|G|3120
8I9W|1|C1|U|3121
8I9W|1|C1|U|3122
*
8I9W|1|C1|A|3222
8I9W|1|C1|C|3223

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CO

DUF2423 domain-containing protein

Chain Lf

60S ribosomal protein l33-like protein