IL_8I9W_085
3D structure
- PDB id
- 8I9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUA*UC
- Length
- 5 nucleotides
- Bulged bases
- 8I9W|1|C1|U|3130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9W_085 not in the Motif Atlas
- Geometric match to IL_5J7L_017
- Geometric discrepancy: 0.2312
- The information below is about IL_5J7L_017
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
8I9W|1|C1|G|3129
8I9W|1|C1|U|3130
8I9W|1|C1|A|3131
*
8I9W|1|C1|U|3155
8I9W|1|C1|C|3156
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CO
- DUF2423 domain-containing protein
- Chain LE
- 60S ribosomal protein L6
- Chain LM
- 60S ribosomal protein L14-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
- Chain Lf
- 60S ribosomal protein l33-like protein
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