IL_8I9W_087

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUCCUC*GUAAUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9W|1|C1|A|3167
8I9W|1|C1|U|3168
8I9W|1|C1|U|3169
8I9W|1|C1|C|3170
8I9W|1|C1|C|3171
8I9W|1|C1|U|3172
8I9W|1|C1|C|3173
*
8I9W|1|C1|G|3197
8I9W|1|C1|U|3198
8I9W|1|C1|A|3199
8I9W|1|C1|A|3200
8I9W|1|C1|U|3201
8I9W|1|C1|U|3202

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain Lf

60S ribosomal protein l33-like protein