IL_8I9W_099

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

8I9W|1|C2|A|189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9W_099 not in the Motif Atlas

Geometric match to IL_1U63_004

Geometric discrepancy: 0.3577

The information below is about IL_1U63_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8I9W|1|C2|G|188
8I9W|1|C2|A|189
8I9W|1|C2|C|190
*
8I9W|1|C2|G|207
8I9W|1|C2|C|208

Current chains

Chain C2

RNA (319-MER)

Nearby chains

Chain CB

Ribosome biogenesis protein C8F11.04

Chain CE

RNA helicase