IL_8I9W_100

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8I9W|1|C2|A|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9W_100 not in the Motif Atlas

Geometric match to IL_1CSL_002

Geometric discrepancy: 0.2712

The information below is about IL_1CSL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8I9W|1|C2|C|224
8I9W|1|C2|G|225
*
8I9W|1|C2|C|293
8I9W|1|C2|A|294
8I9W|1|C2|G|295

Current chains

Chain C2

RNA (319-MER)

Nearby chains

Chain CI

Putative RNA-binding protein

Chain CM

60S ribosomal protein l7-like protein