IL_8I9X_016
3D structure
- PDB id
- 8I9X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCAC*GGGUUAAAUAGCAC
- Length
- 18 nucleotides
- Bulged bases
- 8I9X|1|C1|U|390, 8I9X|1|C1|A|394
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9X_016 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.0924
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8I9X|1|C1|G|368
8I9X|1|C1|C|369
8I9X|1|C1|A|370
8I9X|1|C1|C|371
*
8I9X|1|C1|G|382
8I9X|1|C1|G|383
8I9X|1|C1|G|384
8I9X|1|C1|U|385
8I9X|1|C1|U|386
8I9X|1|C1|A|387
8I9X|1|C1|A|388
8I9X|1|C1|A|389
8I9X|1|C1|U|390
8I9X|1|C1|A|391
8I9X|1|C1|G|392
8I9X|1|C1|C|393
8I9X|1|C1|A|394
8I9X|1|C1|C|395
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Ll
- 60S ribosomal protein L39
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