IL_8I9X_020
3D structure
- PDB id
- 8I9X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAUCAUC*GUGCACUC
- Length
- 15 nucleotides
- Bulged bases
- 8I9X|1|C1|A|445, 8I9X|1|C1|U|446, 8I9X|1|C1|C|470
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8I9X|1|C1|G|444
8I9X|1|C1|A|445
8I9X|1|C1|U|446
8I9X|1|C1|C|447
8I9X|1|C1|A|448
8I9X|1|C1|U|449
8I9X|1|C1|C|450
*
8I9X|1|C1|G|465
8I9X|1|C1|U|466
8I9X|1|C1|G|467
8I9X|1|C1|C|468
8I9X|1|C1|A|469
8I9X|1|C1|C|470
8I9X|1|C1|U|471
8I9X|1|C1|C|472
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CV
- Putative 60S ribosomal protein
- Chain LE
- 60S ribosomal protein L6
- Chain LF
- 60S ribosomal protein l7-like protein
Coloring options: