IL_8I9X_118
3D structure
- PDB id
- 8I9X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAUGUGG*UGUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 8I9X|1|C1|U|525, 8I9X|1|C1|U|547
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9X_118 not in the Motif Atlas
- Homologous match to IL_8P9A_248
- Geometric discrepancy: 0.1521
- The information below is about IL_8P9A_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25001.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8I9X|1|C1|G|522
8I9X|1|C1|A|523
8I9X|1|C1|A|524
8I9X|1|C1|U|525
8I9X|1|C1|G|526
8I9X|1|C1|U|527
8I9X|1|C1|G|528
8I9X|1|C1|G|529
*
8I9X|1|C1|U|542
8I9X|1|C1|G|543
8I9X|1|C1|U|544
8I9X|1|C1|U|545
8I9X|1|C1|A|546
8I9X|1|C1|U|547
8I9X|1|C1|A|548
8I9X|1|C1|G|549
8I9X|1|C1|C|550
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain Cz
- rRNA-processing protein
- Chain LM
- 60S ribosomal protein L14-like protein
- Chain LS
- 60S ribosomal protein L20
Coloring options: