IL_8I9Y_041

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAA*UAAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9Y|1|C1|G|974
8I9Y|1|C1|G|975
8I9Y|1|C1|U|976
8I9Y|1|C1|A|977
8I9Y|1|C1|A|978
*
8I9Y|1|C1|U|1034
8I9Y|1|C1|A|1035
8I9Y|1|C1|A|1036
8I9Y|1|C1|A|1037
8I9Y|1|C1|U|1038

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CL

Putative GTP binding protein

Chain LF

60S ribosomal protein l7-like protein

Chain LS

60S ribosomal protein L20

Chain LT

60S ribosomal protein l21-like protein