IL_8I9Y_054
3D structure
- PDB id
- 8I9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUG*CUC
- Length
- 8 nucleotides
- Bulged bases
- 8I9Y|1|C1|A|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9Y_054 not in the Motif Atlas
- Geometric match to IL_5D8H_003
- Geometric discrepancy: 0.1514
- The information below is about IL_5D8H_003
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_36931.2
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 24
Unit IDs
8I9Y|1|C1|G|1244
8I9Y|1|C1|A|1245
8I9Y|1|C1|C|1246
8I9Y|1|C1|U|1247
8I9Y|1|C1|G|1248
*
8I9Y|1|C1|C|1257
8I9Y|1|C1|U|1258
8I9Y|1|C1|C|1259
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CF
- Ribosome assembly factor mrt4
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain Cz
- rRNA-processing protein
- Chain LK
- 60S ribosomal protein L12-like protein
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